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Beta WB Print
BetaWB
 

DESCRIPTION


Beta Workbench (BetaWB) is a free downloadable software prototype for non commercial purposes (see below) upon acceptance of this licence.
BetaWB is a collection of tools based on the programming language BlenX, explicitly designed to represent biological entities and their interactions.
The BetaWB includes the BetaWB simulator, a stochastic simulator based on an efficient variant of the Gillespie Stochastic Simulation Algorithm (SSA), the BetaWB designer, a graphical editor for developing models and the BetaWB plotter, a tool to analyse the results of a stochastic simulation run.
The current version of BetaWB is beta 2.0. Notable improvements and additions since the last main release include:

  • new language primitives;
  • parametric processes and boxes definitions;
  • user-defined rate functions, variables and constants;
  • transition system and CTMC generation;
  • SBML models export.

SCREENSHOTS


BetaWB screenshots

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REFERENCES


  • Lorenzo Dematté, Corrado Priami, Alessandro Romanel. The Beta Workbench: a computational tool to study the dynamics of biological systems. Briefings in Bioinformatics, 2008. (In press)
    [doi:10.1093/bib/bbn023]

  • Lorenzo Dematté, Corrado Priami, Alessandro Romanel. The BlenX Language: A Tutorial. SFM 2008, LNCS 5016:313-365, Springer-Verlag, 2008.
    [doi:10.1007/978-3-540-68894-5_9] [bib]

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