Beta Workbench (BetaWB) is a free downloadable software prototype for non commercial purposes (see below) upon acceptance of this licence. BetaWB is a collection of tools based on the programming language BlenX, explicitly designed to represent biological entities and their interactions. The BetaWB includes the BetaWB simulator, a stochastic simulator based on an efficient variant of the Gillespie Stochastic Simulation Algorithm (SSA), the BetaWB designer, a graphical editor for developing models and the BetaWB plotter, a tool to analyse the results of a stochastic simulation run. The current version of BetaWB is beta 2.0. Notable improvements and additions since the last main release include:
new language primitives;
parametric processes and boxes definitions;
user-defined rate functions, variables and constants;
transition system and CTMC generation;
SBML models export.
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Lorenzo Dematté, Corrado Priami, Alessandro Romanel. The Beta Workbench: a computational tool to study the dynamics of biological systems. Briefings in Bioinformatics, 2008. (In press) [doi:10.1093/bib/bbn023]
Lorenzo Dematté, Corrado Priami, Alessandro Romanel. The BlenX Language: A Tutorial. SFM 2008, LNCS 5016:313-365, Springer-Verlag, 2008. [doi:10.1007/978-3-540-68894-5_9] [bib]
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