Tabular interface designed to easily create
and simulate models, inspired by biological thinking


MAIN FEATURES

COSBI LAB Model is a new, rule-based modeling tool for biological systems, in which interactions between components are specified by using an intelligible, narrative language.

  • Simple, tabular interface designed for non-experts (no programming or special mathematical skills required)

  • Design biological interactions with different levels of abstraction

  • Integrated, stochastic simulation engine for in silico experiments

  • Sensitivity analysis on kinetic parameters

  • Integrated visualization tools like Plot, Plot Matrix and Graph

COSBI LAB Model

COSBI LAB Model

HOW TO CITE AND REFERENCES

M.L. Guerriero, J. Heath and C. Priami. An automatedtranslation from a narrative language for biological modelling into process algebra. Proceedings of CMSB07, LNBI 4695, 136-151, Springer, 2007.

M.L. Guerriero, A. Dudka, N. Underhill-Day, J.K. Heath, C. Priami. Narrative-based computational modelling of the Gp130/JAK/STAT signalling pathway. BMC Systems Biology, 3:40, 2009.

C. Priami, P. Ballarini and P. Quaglia BlenX4Bio: BlenX for Biologists. Proceedings of CMSB09, LNBI 5688, Springer, 2009.

C. Priami, “Algorithmic systems biology”, Communications of the ACM, vol. 52, issue 5, May 2009.


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