MAIN FEATURES

In silico experiments are performed in COSBI LAB via the integration of COSBI LAB Model and its simulation environment. Models are automatically translated into BlenX, a lower level modeling language and run with a stochastic simulation engine (based on the Gillespie algorithm).

COSBI LAB users can choose to perform:

  • Scanning of parameters for sensitivity analysis

  • Aggregated, multiple-run simulations

  • Single-run simulations


COSBI LAB users can simulate models directly on their personal computer or, for computationally heavy needs, COSBI LAB is integrated with:

  • the Cloud* (only pay for what you use, when you use it)

  • High-performance Computing (HPC) cluster


*COSBI is a Venus-C Partner.

Simulation

Simulation


HOW TO CITE AND REFERENCES

Betawb, COSBI, The Microsoft Research - University of Trento Centre for Computational and Systems Biology, http://www.cosbi.eu/index.php/research/prototypes/betawb

L. Dematté, C. Priami, A. Romanel. The Beta Workbench: a computational tool to study the dynamics of biological systems. Briefings in Bioinformatics, 9(5): 437-449, 2008 # © Oxford Journals, 2008.

Lorenzo Dematté, Roberto Larcher, Alida Palmisano, Corrado Priami, Alessandro Romanel. Programming Biology in BlenX. In Systems Biology for Signaling Networks 1:777-820, Ed. Sangdun Choi, © Springer, 2010.


Know More

Send inquiries to the This email address is being protected from spambots. You need JavaScript enabled to view it. .

.