Graph constructs, visualizes and modifies
graphs as well as calculates measures and layouts
The COSBI LAB suite includes a new version of Graph for creating and managing directed and undirected networks including the following features:
Import data from COSBI LAB and BlenX program files.
Apply algorithms to networks to compute characteristics including Cycles Algorithm, Dominator Algorithm and Niche Algorithm.
Import data from COSBI LAB Model program files retaining the same naming conventions and filtering of BlenX synthetic reactions.
Import from SBML and BIOPAX2 formats.
Data manipulation features to manage large networks.
HOW TO CITE AND REFERENCES
Graph, COSBI, The Microsoft Research - University of Trento Centre for Computational and Systems Biology, http://www.cosbi.eu/index.php/research/prototypes/graph
Roberto Valentini, Ferenc Jordan. COSBILab Graph: the network analysis module of COSBILab Environmental Modelling and Software, 25:886-888, 2010