Journal Papers Modelling self-assembly in BlenX


Abstract

The process through which disordered components spontaneously arrange themselves into patterns is called self-assembly. Molecular self-assembly describes the process by which molecules adopt a defined arrangement without external guidance (e.g. formation of membranes and protein complexes). These biological processes are essential to the functioning of cells. We investigate the usage of BlenX, a process calculi based programming language, for modelling molecular self-assembly of filaments, trees and rings. Moreover, we show how these structures can be used to model actin polymerization.



Paper Details

Authors

R. Larcher,  C. Priami,  A. Romanel

Publication

Transactions on Computational Systems Biology XII, 5945, , 163-198

Language

English
.