poster Rejection-based Stochastic Simulation Algorithm for Biochemical Reaction Systems


Abstract

We present an rejection-based stochastic simulation algorithm (RSSA) for biochemical reaction systems. RSSA is an exact simulation algorithm which improves the simulation by postponing and collapsing as much as possible the number of propensity computations. Propensity of each reaction in RSSA is varied in an interval denoted by a pair of the lower bound and upper bound values. RSSA will use propensity bounds to select the next reaction to fire in two steps: randomly select a candidate reaction, and then apply a rejection test on the candidate reaction to recover the exactness of the algorithm.



Paper Details

Authors

T. Vo

Publication

The Eighth q-bio Conference

Download

/var/papers/1411718486-abstract-q-bio-2014_vhthanh (published).pdf

Language

English
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