A B C E G H I L M N O P R S T U V Y

S

saveModel(Model, String) - Static method in class hSimulator.library.Model
Saves a model to file.
saveTimeSeries(SimulatedTS, String) - Static method in class hSimulator.library.SimulatedTS
Saves a time series to file.
setMaxNumberOfSteps(int) - Method in class hSimulator.library.Simulator
Sets the maximum number of steps that the simulator can compute.
shutDown() - Method in class hSimulator.library.Simulator
Shuts down the java service used for parallel computing.
simDM(int, int, double) - Method in class hSimulator.library.Simulator
Simulates the model according to the Gillespie Direct Method (DM).
simDM(int, List<String>, int, double) - Method in class hSimulator.library.Simulator
Simulates the model according to the Gillespie Direct Method (DM).
simEuler(int, double, double) - Method in class hSimulator.library.Simulator
Simulates the model according to the Euler deterministic algorithm.
simEuler(List<String>, int, double, double) - Method in class hSimulator.library.Simulator
Simulates the model according to the Euler deterministic algorithm.
simHRSSA(int, int, double, int, int, int, double, double) - Method in class hSimulator.library.Simulator
Simulates the model according to the Hybrid Rejection-based Stochastic Simulation Algorithm (HRSSA).
simHRSSA(int, List<String>, int, double, int, int, int, double, double) - Method in class hSimulator.library.Simulator
Simulates the model according to the Hybrid Rejection-based Stochastic Simulation Algorithm (HRSSA).
simRK45(int, double, double, double) - Method in class hSimulator.library.Simulator
Simulates the model according to the Runge-Kutta-Fehlberg (RK45) deterministic algorithm.
simRK45(List<String>, int, double, double, double) - Method in class hSimulator.library.Simulator
Simulates the model according to the Runge-Kutta-Fehlberg (RK45) deterministic algorithm.
simRSSA(int, int, double, int, double) - Method in class hSimulator.library.Simulator
Simulates the model according to the Rejection-based Stochastic Simulation Algorithm (RSSA).
simRSSA(int, List<String>, int, double, int, double) - Method in class hSimulator.library.Simulator
Simulates the model according to the Rejection-based Stochastic Simulation Algorithm (RSSA).
SimulatedTS - Class in hSimulator.library
This object implements an optimized data structures for storing simulated time series.
SimulatedTS(Model, int, double) - Constructor for class hSimulator.library.SimulatedTS
Constructs a new object.
SimulatedTS(Model, List<String>, int, double) - Constructor for class hSimulator.library.SimulatedTS
Constructs a new object.
SimulationEngine - Class in hSimulator.library
This object implements an optimized simulation engine.
SimulationStoppedException - Exception in hSimulator.library
This object implements an exception that is thrown when a simulation process has been stopped by the user before normal completion.
Simulator - Class in hSimulator.library
This object implements an optimized, multithread model simulator.
Simulator(Model) - Constructor for class hSimulator.library.Simulator
Creates a new model simulator.
Simulator(Model, int) - Constructor for class hSimulator.library.Simulator
Creates a new model simulator.
size() - Method in class hSimulator.library.SimulatedTS
Returns the length of the time series stored in the object.
stateSize() - Method in class hSimulator.library.SimulatedTS
Returns the number of variables whose time series are stored in the object.
stop() - Method in class hSimulator.simulator.gui.AppFrame.UpdatePercentage
 
stopSimulation() - Method in class hSimulator.library.Simulator
Stops a simulation process before its completion.
switchReaction(int) - Method in class hSimulator.library.ReactionPartition
Switches the classification of the i-th reaction (fast to slow or viceversa).

A B C E G H I L M N O P R S T U V Y