PROTOTYPES
COSBI transforms ideas into software prototypes,
which can be used by a large community of scientists
HSimulator
Multithread hybrid stochastic/deterministic simulation of biochemical reaction networks.
NASFinder
The Network Activity Score Finder (NASFinder) is a web service for topological and functional analysis of sub-networks connecting an omics-determined module.
L
An imperative, domain specific language to stochastically simulate biological systems
BI-SCUDO
Biomarker Identification-Sample Classification SCUDO
SCUDO
SCUDO is a tool for clustering gene expression profiles for diagnostic purposes using a new type of rank-based signatures
RSSA
Rejection-based Stochastic Simulation Algorithm
SICOMPRE
Simulation-based, qualitative and quantitative prediction of protein complexes.
BetaWB
BetaWB builds molecular and scalable models as well as manages complexity and the combinatorial explosions of models