Multithread hybrid stochastic/deterministic simulation of biochemical reaction networks.
The Network Activity Score Finder (NASFinder) is a web service for topological and functional analysis of sub-networks connecting an omics-determined module.
An imperative, domain specific language to stochastically simulate biological systems
Biomarker Identification-Sample Classification SCUDO
SCUDO is a tool for clustering gene expression profiles for diagnostic purposes using a new type of rank-based signatures
Rejection-based Stochastic Simulation Algorithm
Simulation-based, qualitative and quantitative prediction of protein complexes.
BetaWB builds molecular and scalable models as well as manages complexity and the combinatorial explosions of models